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The Brain Scaffold Builder 6.0.7 documentation
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Getting Started

  • Installation
  • Getting Started
    • Top Level Guide
    • Your first network
    • Managing Scaffold files
    • Guides on Point-neuron simulations
      • Run your first NEST simulation
      • Analyze spike activity results
    • Guides on Multi-compartment neurons modeling
      • Adding morphologies
      • Run your first NEURON simulation
      • Analyze multi-compartment neuron results
    • Create your own components
  • Examples
    • How to label neurons
    • Display morphologies from a compiled network
    • Mouse brain atlas based placement
    • Distribution-based Placement Strategy

Framework concepts

  • Scaffold
  • Configuration
    • Configuration files
      • JSON parser
    • Nodes
    • Configuration attributes
    • Configuration reference
  • Storage
  • Workflow parallelization

Domains

  • BSB components
  • Topology
    • Introduction
    • Regions
    • Partitions
  • Cell Types
  • Morphology
    • Morphologies
    • Morphology parsers
    • Morphology repositories
    • MorphologySet
  • Placement
    • Placement
    • List of placement strategies
    • Placement Indications
    • Placement sets
  • Connectivity
    • Connectivity
    • Writing a component
    • List of strategies
    • Geometric shape connectivity strategies
    • Connectivity sets
  • Simulation
    • Simulating Networks
    • Simulate using NEST
    • Simulate using NEURON
    • Simulate using ARBOR
    • Simulation Controllers

Command-Line Interface

  • Introduction
  • List of commands
  • Options

References

  • bsb-core
  • bsb-hdf5
  • bsb-json
  • bsb-yaml
  • bsb-arbor
  • bsb-nest
  • bsb-neuron

FAQ

  • FAQ

Developer Guides:

  • Introduction
  • Developer Guidelines
  • Documentation
  • Services
  • Configuring your BSB Python Projects
  • Plugins
  • Configuration hooks
  • Developer modules
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ExamplesΒΆ

BSB Examples

  • How to label neurons
  • Display morphologies from a compiled network
  • Mouse brain atlas based placement
  • Distribution-based Placement Strategy
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How to label neurons
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Create your own components
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